Biochemistry for Biology

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A course of the


Please refer also to the main topic:Biochemistry wiki for Biochemistry for Chemistry and for Medicine and Pharmacy.

You are invited to improve thoughtfully upon these subjects. Please refer to the Discussion page for proposals, discussion and comments.


Contents

[edit] Learning Projects

[edit] Lesson 1: Water's Unique Chemistry

[edit] Lesson 2: Amino Acids

[edit] Lesson 3: Proteins

[edit] Lesson 4: Enzymes

[edit] Essay and Discussion Themes

  1. w:Digestion and absorption
  2. Kidney
  3. w:Nerve impulse, transmission, w:neuromuscular junction and modulators.
  4. w:The origin of life on Earth
  5. The possible origin of life outside Earth (w:Astrobiology)
  6. Iron, w:Heme
  7. w:Coagulation
  8. Voluntary w:Muscle (item) metabolic peculiarities (item, item, item) and the w:neuromuscular junction
  9. w:Connective tissue (w:collagen, w:elastin, w:reticulin)

...

[edit] Topics and Learning Materials

  • Basics
    1. The International System of Units, item
    2. Nomenclature of organic chemistry,item,
    3. w:Logarithms
    4. w:Nuclides
    5. w:Radioactive decay
    6. w:gas laws, Gases and Gas Laws
    7. w:Partial pressure and w:mole fraction
    8. w:Osmosis
    9. w:Diffusion
    10. pH (needs a little more)
    11. Buffers
  • Biomolecules -- Structures, classification and properties of:
    1. w:Nucleic acids
    2. w:Amino acids
    3. w:Protein
    4. w:Carbohydrate
    5. w:Lipid
  • Laboratory and Analytical Methods
    1. Simple (glass) laboratory equipment and how to use it
    2. Laboratory safety
    3. w:Size exclusion chromatography
    4. UV-VIS Spectrometry
    5. IR spectrometry
    6. Centrifugation and w:Ultracentrifugation
    7. w:Electrophoresis
    8. w:Chromatography
    9. Gas chromatography and mass spectrometry
    10. Gamma counting
    11. Beta counting
    12. w:Enzyme assays
    13. w:PCR
      1. In vivo nucleic acids synthesis
      2. Nucleic acid degradation, pyrimidine and purine catabolism
      3. w:Peptide bond
      4. In vivo protein synthesis
      5. w:Micronutrients and w:Vitamins
      6. w:Enzymes
      7. Regulation of metabolic pathways
      8. Associated: w:Hemoglobin, gas transportation
    • Amino acids
      1. w:Decarboxylation
      2. w:Transamination
      3. General amino acid synthesis
      4. General amino acid catabolism
      5. Special amino acid metabolism
      6. Amino acid interconversion
      7. w:Urea cycle, item
      8. Gamma-glutamyl cycle
      9. Associated: w:Gout,w:Maple syrup disease
    • Carbohydrates
      1. w:Glycolysis
      2. Krebs' cycle
      3. w:Pyruvate decarboxylation
      4. The ATP cycle
      5. w:Oxidative phosphorilation
      6. w:C4 carbon fixation
      7. w:Photosynthesis
      8. w:Calvin Cycle
      9. Dickens-Horecker cycle
      10. Hexose interconversions
      11. w:Neoglucogenesis
      12. w:Glycogenesis
      13. w:Glycogenolysis
      14. w:Cori cycle
      15. Carbohydrate regulation mechanism: w:glucagon and w:insulin
      16. Associated: ...
    • Lipids
      1. w:fatty acids
      2. Essential fatty acids, item, poly-unsaturated fatty acids (w:PUFA); w:eicosanoids: w:prostaglandins, w:thromboxanes, w:prostacyclin and w:leukotrienes.
      3. The w:lipid bilayer, item, and transport across it
      4. w:Lipid peroxidation
      5. Acylglycerols
      6. Triacylglycerols
      7. Sn system
      8. w:Carnitine and membrane transport of fatty acids
      9. w:Fatty acid oxidations
      10. w:Beta oxidation
      11. w:Ketogenesis
      12. Lipid synthesis (w:lipogenesis)
      13. w:Arachidonic acid cascade and the eicosanoids (above)
      14. Associated: ...
      15. w:Lipoproteins and cholesterol
      16. The serum lipoprotein transport system
      17. w:Cholesterol metabolism, regulation and transport
      18. Lipoprotein metabolism
      19. w:Chylomicra and w:VLDL
      20. w:LDL and w:HDL
      21. Regulation of lipoprotein metabolism

[edit] Books

By alphabetical order of the first author's surname.

[edit] General Biochemistry

  • Osgood M, Ocorr K. "The Absolute, Ultimate Guide to Lehninger Principles of Biochemistry Study Guide and Solution Manual". Worth Publishers. New York. 2000. ISBN 007-1256300-9.
  • Online Biology Book [7] or [8]

[edit] Other resources

UH tutorial [9]

Interactives [10]